Critical evaluation of methods to incorporate entropy loss upon binding in high-throughput docking.
Salaniwal S, Manas ES, Alvarez JC, Unwalla RJ, Proteins, 2007 Feb 1 - link

High-throughput docking as a source of novel drug leads.
Alvarez JC, Curr Opin Chem Biol, 2004 Aug - link

Pharmacophore-based molecular docking to account for ligand flexibility.
Joseph-McCarthy D, Thomas BE 4th, Belmarsh M, Moustakas D, Alvarez JC, Proteins, 2003 May 1 - link