Implicit flexibility in protein docking: cross-docking and local refinement.
Krol M, Chaleil RA, Tournier AL, Bates PA, Proteins, 2007 Dec 1 - link

Flexible relaxation of rigid-body docking solutions.
Krol M, Tournier AL, Bates PA, Proteins, 2007 Jul 1 - link

Incorporation of flexibility into rigid-body docking: applications in rounds 3-5 of CAPRI.
Smith GR, Fitzjohn PW, Page CS, Bates PA, Proteins, 2005 Aug 1 - link

The relationship between the flexibility of proteins and their conformational states on forming protein-protein complexes with an application to protein-protein docking.
Smith GR, Sternberg MJ, Bates PA, J Mol Biol, 2005 Apr 15 - link

Guided docking: first step to locate potential binding sites.
Fitzjohn PW, Bates PA, Proteins, 2003 Jul 1 - link