Docking to single-domain and multiple-domain proteins: old and new challenges.
Ben-Zeev E, Kowalsman N, Ben-Shimon A, Segal D, Atarot T, Noivirt O, Shay T, Eisenstein M, Proteins, 2005 Aug 1 - link

Weighted geometric docking: incorporating external information in the rotation-translation scan.
Ben-Zeev E, Eisenstein M, Proteins, 2003 Jul 1 - link

Prediction of the structure of the complex between the 30S ribosomal subunit and colicin E3 via weighted-geometric docking.
Ben-Zeev E, Zarivach R, Shoham M, Yonath A, Eisenstein M, J Biomol Struct Dyn, 2003 Apr - link