Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility.
van Dijk M, van Dijk AD, Hsu V, Boelens R, Bonvin AM, Nucleic Acids Res, 2006 - link

Combining NMR relaxation with chemical shift perturbation data to drive protein-protein docking.
van Dijk AD, Kaptein R, Boelens R, Bonvin AM, J Biomol NMR, 2006 Apr - link

Data-driven docking for the study of biomolecular complexes.
van Dijk AD, Boelens R, Bonvin AM, FEBS J, 2005 Jan - link

Structural model of the UbcH5B/CNOT4 complex revealed by combining NMR, mutagenesis, and docking approaches.
Dominguez C, Bonvin AM, Winkler GS, van Schaik FM, Timmers HT, Boelens R, Structure, 2004 Apr - link

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.
Dominguez C, Boelens R, Bonvin AM, J Am Chem Soc, 2003 Feb 19 - link

Monte Carlo docking of protein-DNA complexes: incorporation of DNA flexibility and experimental data.
Knegtel RM, Boelens R, Kaptein R, Protein Eng, 1994 Jun - link