Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008.
Michino M, Abola E, GPCR Dock 2008 participants, Brooks CL 3rd, Dixon JS, Moult J, Stevens RC, Nat Rev Drug Discov, 2009 Jun - link

Comparative study of several algorithms for flexible ligand docking.
Bursulaya BD, Totrov M, Abagyan R, Brooks CL 3rd, J Comput Aided Mol Des, 2003 Nov - link

Detailed analysis of grid-based molecular docking: A case study of CDOCKER-A CHARMm-based MD docking algorithm.
Wu G, Robertson DH, Brooks CL 3rd, Vieth M, J Comput Chem, 2003 Oct - link