Construction and assessment of reaction models of class I EPSP synthase: molecular docking and density functional theoretical calculations.
Ramalho TC, Caetano MS, da Cunha EF, Souza TC, Rocha MV, J Biomol Struct Dyn, 2009 Oct - link

Homology modeling of wild-type, D516V, and H526L Mycobacterium tuberculosis RNA polymerase and their molecular docking study with inhibitors.
Josa D, da Cunha EF, Ramalho TC, Souza TC, Caetano MS, J Biomol Struct Dyn, 2008 Feb - link