Toward high-resolution homology modeling of antibody Fv regions and application to antibody-antigen docking.
Sivasubramanian A, Sircar A, Chaudhury S, Gray JJ, Proteins, 2009 Feb 1 - link

Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles.
Chaudhury S, Gray JJ, J Mol Biol, 2008 Sep 12 - link