Molecular docking programs successfully predict the binding of a beta-lactamase inhibitory protein to TEM-1 beta-lactamase.
Strynadka NC, Eisenstein M, Katchalski-Katzir E, Shoichet BK, Kuntz ID, Abagyan R, Totrov M, Janin J, Cherfils J, Zimmerman F, Olson A, Duncan B, Rao M, Jackson R, Sternberg M, James MN, Nat Struct Biol, 1996 Mar - link

Rigid-body docking with mutant constraints of influenza hemagglutinin with antibody HC19.
Cherfils J, Bizebard T, Knossow M, Janin J, Proteins, 1994 Jan - link

Protein-protein recognition analyzed by docking simulation.
Cherfils J, Duquerroy S, Janin J, Proteins, 1991 - link