Using molecular docking, 3D-QSAR, and cluster analysis for screening structurally diverse data sets of pharmacological interest.
Santos-Filho OA, Cherkasov A, J Chem Inf Model, 2008 Oct - link

Progressive docking: a hybrid QSAR/docking approach for accelerating in silico high throughput screening.
Cherkasov A, Ban F, Li Y, Fallahi M, Hammond GL, J Med Chem, 2006 Dec 14 - link

'Inductive' charges on atoms in proteins: comparative docking with the extended steroid benchmark set and discovery of a novel SHBG ligand.
Cherkasov A, Shi Z, Li Y, Jones SJ, Fallahi M, Hammond GL, J Chem Inf Model, 2005 Nov-Dec - link