Data-driven docking: HADDOCK's adventures in CAPRI.
van Dijk AD, de Vries SJ, Dominguez C, Chen H, Zhou HX, Bonvin AM, Proteins, 2005 Aug 1 - link

Structural model of the UbcH5B/CNOT4 complex revealed by combining NMR, mutagenesis, and docking approaches.
Dominguez C, Bonvin AM, Winkler GS, van Schaik FM, Timmers HT, Boelens R, Structure, 2004 Apr - link

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.
Dominguez C, Boelens R, Bonvin AM, J Am Chem Soc, 2003 Feb 19 - link