Screening drug-like compounds by docking to homology models: a systematic study.
Kairys V, Fernandes MX, Gilson MK, J Chem Inf Model, 2006 Jan-Feb - link

Lipid membrane-induced optimization for ligand-receptor docking: recent tools and insights for the "membrane catalysis" model.
Castanho MA, Fernandes MX, Eur Biophys J, 2006 Jan - link

Comparing ligand interactions with multiple receptors via serial docking.
Fernandes MX, Kairys V, Gilson MK, J Chem Inf Comput Sci, 2004 Nov-Dec - link