Structural prediction of protein-RNA interaction by computational docking with propensity-based statistical potentials.
Perez-Cano L, Solernou A, Pons C, Fernandez-Recio J, Pac Symp Biocomput, 2010 - link

Present and future challenges and limitations in protein-protein docking.
Pons C, Grosdidier S, Solernou A, Perez-Cano L, Fernandez-Recio J, Proteins, 2009 Aug 5 - link

Pushing structural information into the yeast interactome by high-throughput protein docking experiments.
Mosca R, Pons C, Fernandez-Recio J, Aloy P, PLoS Comput Biol, 2009 Aug - link

FRODOCK: a new approach for fast rotational protein-protein docking.
Garzon JI, Lopez-Blanco JR, Pons C, Kovacs J, Abagyan R, Fernandez-Recio J, Chacon P, Bioinformatics, 2009 Oct 1 - link

Predicting protein-protein interfaces as clusters of optimal docking area points.
Arafat Y, Kamruzzaman J, Karmakar GC, Fernandez-Recio J, Int J Data Min Bioinform, 2009 - link

Identification of hot-spot residues in protein-protein interactions by computational docking.
Grosdidier S, Fernandez-Recio J, BMC Bioinformatics, 2008 Oct 21 - link

Structural assembly of two-domain proteins by rigid-body docking.
Cheng TM, Blundell TL, Fernandez-Recio J, BMC Bioinformatics, 2008 Oct 16 - link

Docking of cytochrome c6 and plastocyanin to the aa3-type cytochrome c oxidase in the cyanobacterium Phormidium laminosum.
Hart SE, Howe CJ, Mizuguchi K, Fernandez-Recio J, Protein Eng Des Sel, 2008 Dec - link

In silico docking of urokinase plasminogen activator and integrins.
Degryse B, Fernandez-Recio J, Citro V, Blasi F, Cubellis MV, BMC Bioinformatics, 2008 Mar 26 - link

Docking analysis of transient complexes: interaction of ferredoxin-NADP+ reductase with ferredoxin and flavodoxin.
Medina M, Abagyan R, Gomez-Moreno C, Fernandez-Recio J, Proteins, 2008 Aug 15 - link

Prediction and scoring of docking poses with pyDock.
Grosdidier S, Pons C, Solernou A, Fernandez-Recio J, Proteins, 2007 Dec 1 - link

pyDock: electrostatics and desolvation for effective scoring of rigid-body protein-protein docking.
Cheng TM, Blundell TL, Fernandez-Recio J, Proteins, 2007 Aug 1 - link

Structural and functional characterization of binding sites in metallocarboxypeptidases based on Optimal Docking Area analysis.
Fernandez D, Vendrell J, Aviles FX, Fernandez-Recio J, Proteins, 2007 Jul 1 - link

New efficient substrates for semicarbazide-sensitive amine oxidase/VAP-1 enzyme: analysis by SARs and computational docking.
Yraola F, Garcia-Vicente S, Fernandez-Recio J, Albericio F, Zorzano A, Marti L, Royo M, J Med Chem, 2006 Oct 19 - link

Efficient restraints for protein-protein docking by comparison of observed amino acid substitution patterns with those predicted from local environment.
Chelliah V, Blundell TL, Fernandez-Recio J, J Mol Biol, 2006 Apr 14 - link

Improving CAPRI predictions: optimized desolvation for rigid-body docking.
Fernandez-Recio J, Abagyan R, Totrov M, Proteins, 2005 Aug 1 - link

Optimal docking area: a new method for predicting protein-protein interaction sites.
Fernandez-Recio J, Totrov M, Skorodumov C, Abagyan R, Proteins, 2005 Jan 1 - link

Identification of protein-protein interaction sites from docking energy landscapes.
Fernandez-Recio J, Totrov M, Abagyan R, J Mol Biol, 2004 Jan 16 - link

ICM-DISCO docking by global energy optimization with fully flexible side-chains.
Fernandez-Recio J, Totrov M, Abagyan R, Proteins, 2003 Jul 1 - link

Screened charge electrostatic model in protein-protein docking simulations.
Fernandez-Recio J, Totrov M, Abagyan R, Pac Symp Biocomput, 2002 - link

Soft protein-protein docking in internal coordinates.
Fernandez-Recio J, Totrov M, Abagyan R, Protein Sci, 2002 Feb - link