AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility.
Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, Goodsell DS, Olson AJ, J Comput Chem, 2009 Dec - link

Empirical entropic contributions in computational docking: evaluation in APS reductase complexes.
Chang MW, Belew RK, Carroll KS, Olson AJ, Goodsell DS, J Comput Chem, 2008 Aug - link

Automated docking of ligands to an artificial active site: augmenting crystallographic analysis with computer modeling.
Rosenfeld RJ, Goodsell DS, Musah RA, Morris GM, Goodin DB, Olson AJ, J Comput Aided Mol Des, 2003 Aug - link

Automated docking to multiple target structures: incorporation of protein mobility and structural water heterogeneity in AutoDock.
Osterberg F, Morris GM, Sanner MF, Olson AJ, Goodsell DS, Proteins, 2002 Jan 1 - link

Docking of 4-oxalocrotonate tautomerase substrates: implications for the catalytic mechanism.
Soares TA, Goodsell DS, Briggs JM, Ferreira R, Olson AJ, Biopolymers, 1999 Sep - link

Automated docking and the search for HIV protease inhibitors.
Olson AJ, Goodsell DS, SAR QSAR Environ Res, 1998 - link

Distributed automated docking of flexible ligands to proteins: parallel applications of AutoDock 2.4.
Morris GM, Goodsell DS, Huey R, Olson AJ, J Comput Aided Mol Des, 1996 Aug - link

Automated docking of flexible ligands: applications of AutoDock.
Goodsell DS, Morris GM, Olson AJ, J Mol Recognit, 1996 Jan-Feb - link

Automated docking in crystallography: analysis of the substrates of aconitase.
Goodsell DS, Lauble H, Stout CD, Olson AJ, Proteins, 1993 Sep - link

Automated docking of substrates to proteins by simulated annealing.
Goodsell DS, Olson AJ, Proteins, 1990 - link