Approaching the CAPRI challenge with an efficient geometry-based docking.
Inbar Y, Schneidman-Duhovny D, Halperin I, Oron A, Nussinov R, Wolfson HJ, Proteins, 2005 Aug 1 - link

Protein-protein interactions; coupling of structurally conserved residues and of hot spots across interfaces. Implications for docking.
Halperin I, Wolfson H, Nussinov R, Structure, 2004 Jun - link

Taking geometry to its edge: fast unbound rigid (and hinge-bent) docking.
Schneidman-Duhovny D, Inbar Y, Polak V, Shatsky M, Halperin I, Benyamini H, Barzilai A, Dror O, Haspel N, Nussinov R, Wolfson HJ, Proteins, 2003 Jul 1 - link

Principles of docking: An overview of search algorithms and a guide to scoring functions.
Halperin I, Ma B, Wolfson H, Nussinov R, Proteins, 2002 Jun 1 - link