Virtual fragment screening: an exploration of various docking and scoring protocols for fragments using Glide.
Kawatkar S, Wang H, Czerminski R, Joseph-McCarthy D, J Comput Aided Mol Des, 2009 Jun 3 - link

Investigation of MM-PBSA rescoring of docking poses.
Thompson DC, Humblet C, Joseph-McCarthy D, J Chem Inf Model, 2008 May - link

Lead optimization via high-throughput molecular docking.
Joseph-McCarthy D, Baber JC, Feyfant E, Thompson DC, Humblet C, Curr Opin Drug Discov Devel, 2007 May - link

Pharmacophore-based molecular docking to account for ligand flexibility.
Joseph-McCarthy D, Thomas BE 4th, Belmarsh M, Moustakas D, Alvarez JC, Proteins, 2003 May 1 - link