Screening drug-like compounds by docking to homology models: a systematic study.
Kairys V, Fernandes MX, Gilson MK, J Chem Inf Model, 2006 Jan-Feb - link

Comparing ligand interactions with multiple receptors via serial docking.
Fernandes MX, Kairys V, Gilson MK, J Chem Inf Comput Sci, 2004 Nov-Dec - link

Enhanced docking with the mining minima optimizer: acceleration and side-chain flexibility.
Kairys V, Gilson MK, J Comput Chem, 2002 Dec - link