Similarity-driven flexible ligand docking.
Fradera X, Knegtel RM, Mestres J, Proteins, 2000 Sep 1 - link

Efficacy and selectivity in flexible database docking.
Knegtel RM, Wagener M, Proteins, 1999 Nov 15 - link

Comparison of two implementations of the incremental construction algorithm in flexible docking of thrombin inhibitors.
Knegtel RM, Bayada DM, Engh RA, von der Saal W, van Geerestein VJ, Grootenhuis PD, J Comput Aided Mol Des, 1999 Mar - link

Molecular docking to ensembles of protein structures.
Knegtel RM, Kuntz ID, Oshiro CM, J Mol Biol, 1997 Feb 21 - link

Monte Carlo docking of protein-DNA complexes: incorporation of DNA flexibility and experimental data.
Knegtel RM, Boelens R, Kaptein R, Protein Eng, 1994 Jun - link