In silico mutagenesis and docking studies of Pseudomonas aeruginosa PA-IIL lectin predicting binding modes and energies.
Adam J, Kriz Z, Prokop MP, Wimmerova M, Koca J, J Chem Inf Model, 2008 Nov - link

Single-coordinate-driving method for molecular docking: application to modeling of guest inclusion in cyclodextrin.
Koca J, Ludin M, Perez S, Imberty A, J Mol Graph Model, 2000 Apr - link

Docking-based development of purine-like inhibitors of cyclin-dependent kinase-2.
Otyepka M, Krystof V, Havlicek L, Siglerova V, Strnad M, Koca J, J Med Chem, 2000 Jun 29 - link