Hierarchical docking of databases of multiple ligand conformations.
Lorber DM, Shoichet BK, Curr Top Med Chem, 2005 - link

Protein-protein docking with multiple residue conformations and residue substitutions.
Lorber DM, Udo MK, Shoichet BK, Protein Sci, 2002 Jun - link

Docking molecules by families to increase the diversity of hits in database screens: computational strategy and experimental evaluation.
Su AI, Lorber DM, Weston GS, Baase WA, Matthews BW, Shoichet BK, Proteins, 2001 Feb 1 - link

Flexible ligand docking using conformational ensembles.
Lorber DM, Shoichet BK, Protein Sci, 1998 Apr - link