Automated docking to explore subsite binding by glycoside hydrolase family 6 cellobiohydrolases and endoglucanases.
Mertz B, Hill AD, Mulakala C, Reilly PJ, Biopolymers, 2007 Nov - link

Docking studies on glycoside hydrolase Family 47 endoplasmic reticulum alpha-(1-->2)-mannosidase I to elucidate the pathway to the substrate transition state.
Mulakala C, Nerinckx W, Reilly PJ, Carbohydr Res, 2006 Sep 25 - link

Force calculations in automated docking: enzyme-substrate interactions in Fusarium oxysporum Cel7B.
Mulakala C, Reilly PJ, Proteins, 2005 Nov 15 - link

Hypocrea jecorina (Trichoderma reesei) Cel7A as a molecular machine: A docking study.
Mulakala C, Reilly PJ, Proteins, 2005 Sep 1 - link

Understanding protein structure-function relationships in Family 47 alpha-1,2-mannosidases through computational docking of ligands.
Mulakala C, Reilly PJ, Proteins, 2002 Oct 1 - link