Binding mode prediction of cytochrome p450 and thymidine kinase protein-ligand complexes by consideration of water and rescoring in automated docking.
de Graaf C, Pospisil P, Pos W, Folkers G, Vermeulen NP, J Med Chem, 2005 Apr 7 - link

Methodology and problems of protein-ligand docking: case study of dihydroorotate dehydrogenase, thymidine kinase, and phosphodiesterase 4.
Pospisil P, Kuoni T, Scapozza L, Folkers G, J Recept Signal Transduct Res, 2002 Feb-Nov - link