3-D clustering: a tool for high throughput docking.
Priestle JP, J Mol Model, 2009 May - link

Ligand-specific scoring functions: improved ranking of docking solutions.
Pyrkov TV, Priestle JP, Jacoby E, Efremov RG, SAR QSAR Environ Res, 2008 Jan-Mar - link

Docking of ATP to Ca-ATPase: considering protein domain motions.
Pyrkov TV, Kosinsky YA, Arseniev AS, Priestle JP, Jacoby E, Efremov RG, J Chem Inf Model, 2007 May-Jun - link

Complementarity of hydrophobic properties in ATP-protein binding: a new criterion to rank docking solutions.
Pyrkov TV, Kosinsky YA, Arseniev AS, Priestle JP, Jacoby E, Efremov RG, Proteins, 2007 Feb 1 - link