Flexible ligand docking with Glide.
Repasky MP, Shelley M, Friesner RA, Curr Protoc Bioinformatics, 2007 Jun - link

Improving database enrichment through ensemble docking.
Rao S, Sanschagrin PC, Greenwood JR, Repasky MP, Sherman W, Farid R, J Comput Aided Mol Des, 2008 Sep - link

Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes.
Friesner RA, Murphy RB, Repasky MP, Frye LL, Greenwood JR, Halgren TA, Sanschagrin PC, Mainz DT, J Med Chem, 2006 Oct 19 - link

Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.
Friesner RA, Banks JL, Murphy RB, Halgren TA, Klicic JJ, Mainz DT, Repasky MP, Knoll EH, Shelley M, Perry JK, Shaw DE, Francis P, Shenkin PS, J Med Chem, 2004 Mar 25 - link