FireDock: a web server for fast interaction refinement in molecular docking.
Mashiach E, Schneidman-Duhovny D, Andrusier N, Nussinov R, Wolfson HJ, Nucleic Acids Res, 2008 Jul 1 - link

Geometry-based flexible and symmetric protein docking.
Schneidman-Duhovny D, Inbar Y, Nussinov R, Wolfson HJ, Proteins, 2005 Aug 1 - link

Approaching the CAPRI challenge with an efficient geometry-based docking.
Inbar Y, Schneidman-Duhovny D, Halperin I, Oron A, Nussinov R, Wolfson HJ, Proteins, 2005 Aug 1 - link

PatchDock and SymmDock: servers for rigid and symmetric docking.
Schneidman-Duhovny D, Inbar Y, Nussinov R, Wolfson HJ, Nucleic Acids Res, 2005 Jul 1 - link

Predicting molecular interactions in silico: II. Protein-protein and protein-drug docking.
Schneidman-Duhovny D, Nussinov R, Wolfson HJ, Curr Med Chem, 2004 Jan - link

Taking geometry to its edge: fast unbound rigid (and hinge-bent) docking.
Schneidman-Duhovny D, Inbar Y, Polak V, Shatsky M, Halperin I, Benyamini H, Barzilai A, Dror O, Haspel N, Nussinov R, Wolfson HJ, Proteins, 2003 Jul 1 - link