ParDOCK: an all atom energy based Monte Carlo docking protocol for protein-ligand complexes.
Gupta A, Gandhimathi A, Sharma P, Jayaram B, Protein Pept Lett, 2007 - link

A computational docking study for prediction of binding mode of diospyrin and derivatives: Inhibitors of human and leishmanial DNA topoisomerase-I.
Chhabra S, Sharma P, Ghoshal N, Bioorg Med Chem Lett, 2007 Aug 15 - link

Evidence that the MAPK-docking site in MAPKK Dpbs2p is essential for its function.
Sharma P, Mondal AK, Biochem Biophys Res Commun, 2006 Jul 28 - link