A fast protein-protein docking algorithm using series expansion in terms of spherical basis functions.
Sumikoshi K, Terada T, Nakamura S, Shimizu K, Genome Inform, 2005 - link

Structure, epitope mapping, and docking simulation of a gibberellin mimic peptide as a peptidyl mimotope for a hydrophobic ligand.
Murata T, Hemmi H, Nakamura S, Shimizu K, Suzuki Y, Yamaguchi I, FEBS J, 2005 Oct - link