Protein-protein docking: progress in CAPRI rounds 6-12 using a combination of methods: the introduction of steered solvated molecular dynamics.
Heifetz A, Pal S, Smith GR, Proteins, 2007 Dec 1 - link

Incorporation of flexibility into rigid-body docking: applications in rounds 3-5 of CAPRI.
Smith GR, Fitzjohn PW, Page CS, Bates PA, Proteins, 2005 Aug 1 - link

The relationship between the flexibility of proteins and their conformational states on forming protein-protein complexes with an application to protein-protein docking.
Smith GR, Sternberg MJ, Bates PA, J Mol Biol, 2005 Apr 15 - link

Evaluation of the 3D-Dock protein docking suite in rounds 1 and 2 of the CAPRI blind trial.
Smith GR, Sternberg MJ, CAPRI blind trial, Proteins, 2003 Jul 1 - link

Prediction of protein-protein interactions by docking methods.
Smith GR, Sternberg MJ, Curr Opin Struct Biol, 2002 Feb - link