Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit.
Pan H, Agarwalla S, Moustakas DT, Finer-Moore J, Stroud RM, Proc Natl Acad Sci U S A, 2003 Oct 28 - link

Catalysis, specificity, and ACP docking site of Streptomyces coelicolor malonyl-CoA:ACP transacylase.
Keatinge-Clay AT, Shelat AA, Savage DF, Tsai SC, Miercke LJ, O'Connell JD 3rd, Khosla C, Stroud RM, Structure, 2003 Feb - link

Approaches to solving the rigid receptor problem by identifying a minimal set of flexible residues during ligand docking.
Anderson AC, O'Neil RH, Surti TS, Stroud RM, Chem Biol, 2001 May - link