GWIDD: Genome-wide protein docking database.
Kundrotas PJ, Zhu Z, Vakser IA, Nucleic Acids Res, 2009 Nov 9 - link

DOCKGROUND protein-protein docking decoy set.
Liu S, Gao Y, Vakser IA, Bioinformatics, 2008 Nov 15 - link

DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
Gao Y, Douguet D, Tovchigrechko A, Vakser IA, Proteins, 2007 Dec 1 - link

GRAMM-X public web server for protein-protein docking.
Tovchigrechko A, Vakser IA, Nucleic Acids Res, 2006 Jul 1 - link

Development and testing of an automated approach to protein docking.
Tovchigrechko A, Vakser IA, Proteins, 2005 Aug 1 - link

The role of geometric complementarity in secondary structure packing: a systematic docking study.
Jiang S, Tovchigrechko A, Vakser IA, Protein Sci, 2003 Aug - link

Docking of protein models.
Tovchigrechko A, Wells CA, Vakser IA, Protein Sci, 2002 Aug - link

Evaluation of GRAMM low-resolution docking methodology on the hemagglutinin-antibody complex.
Vakser IA, Proteins, 1997 - link

Low-resolution docking: prediction of complexes for underdetermined structures.
Vakser IA, Biopolymers, 1996 Sep - link

Protein docking for low-resolution structures.
Vakser IA, Protein Eng, 1995 Apr - link

Hydrophobic docking: a proposed enhancement to molecular recognition techniques.
Vakser IA, Aflalo C, Proteins, 1994 Dec - link