Fully automated molecular mechanics based induced fit protein-ligand docking method.
Koska J, Spassov VZ, Maynard AJ, Yan L, Austin N, Flook PK, Venkatachalam CM, J Chem Inf Model, 2008 Oct - link

LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites.
Venkatachalam CM, Jiang X, Oldfield T, Waldman M, J Mol Graph Model, 2003 Jan - link