Protein-protein docking by simulating the process of association subject to biochemical constraints.
Motiejunas D, Gabdoulline R, Wang T, Feldman-Salit A, Johann T, Winn PJ, Wade RC, Proteins, 2008 Jun - link

Comparison of the binding and reactivity of plant and mammalian peroxidases to indole derivatives by computational docking.
Hallingback HR, Gabdoulline RR, Wade RC, Biochemistry, 2006 Mar 7 - link

The impact of protein flexibility on protein-protein docking.
Ehrlich LP, Nilges M, Wade RC, Proteins, 2005 Jan 1 - link

Comparative binding energy analysis of haloalkane dehalogenase substrates: modelling of enzyme-substrate complexes by molecular docking and quantum mechanical calculations.
Kmunicek J, Bohac M, Luengo S, Gago F, Wade RC, Damborsky J, J Comput Aided Mol Des, 2003 May-Jun - link

Implicit solvent models for flexible protein-protein docking by molecular dynamics simulation.
Wang T, Wade RC, Proteins, 2003 Jan 1 - link

CASP2 molecular docking predictions with the LIGIN software.
Sobolev V, Moallem TM, Wade RC, Vriend G, Edelman M, Proteins, 1997 - link

Molecular docking using surface complementarity.
Sobolev V, Wade RC, Vriend G, Edelman M, Proteins, 1996 May - link