Protein-protein docking by simulating the process of association subject to biochemical constraints.
Motiejunas D, Gabdoulline R, Wang T, Feldman-Salit A, Johann T, Winn PJ, Wade RC, Proteins, 2008 Jun - link

Rational design of peptide ligand for affinity chromatography of tissue-type plasminogen activator by the combination of docking and molecular dynamics simulations.
Liu FF, Dong XY, Wang T, Sun Y, J Chromatogr A, 2007 Dec 21 - link

Rational design of affinity peptide ligand by flexible docking simulation.
Liu FF, Wang T, Dong XY, Sun Y, J Chromatogr A, 2007 Mar 30 - link

Molecular docking and three-dimensional quantitative structure-activity relationship studies on the binding modes of herbicidal 1-(substituted phenoxyacetoxy)alkylphosphonates to the E1 component of pyruvate dehydrogenase.
Peng H, Wang T, Xie P, Chen T, He HW, Wan J, J Agric Food Chem, 2007 Mar 7 - link

Implicit solvent models for flexible protein-protein docking by molecular dynamics simulation.
Wang T, Wade RC, Proteins, 2003 Jan 1 - link