Soft docking and multiple receptor conformations in virtual screening.
Ferrari AM, Wei BQ, Costantino L, Shoichet BK, J Med Chem, 2004 Oct 7 - link

Testing a flexible-receptor docking algorithm in a model binding site.
Wei BQ, Weaver LH, Ferrari AM, Matthews BW, Shoichet BK, J Mol Biol, 2004 Apr 9 - link

A model binding site for testing scoring functions in molecular docking.
Wei BQ, Baase WA, Weaver LH, Matthews BW, Shoichet BK, J Mol Biol, 2002 Sep 13 - link