New azoles with potent antifungal activity: design, synthesis and molecular docking.
Che X, Sheng C, Wang W, Cao Y, Xu Y, Ji H, Dong G, Miao Z, Yao J, Zhang W, Eur J Med Chem, 2009 Oct - link

Combining 3D-QSAR, docking, molecular dynamics and MM/PBSA methods to predict binding modes for nonsteroidal selective modulator to glucocorticoid receptor.
Xu Y, Zhang T, Chen M, Bioorg Med Chem Lett, 2009 Jan 15 - link

Structure-based prediction of transcription factor binding sites using a protein-DNA docking approach.
Liu Z, Guo JT, Li T, Xu Y, Proteins, 2008 Sep - link

Molecular docking and 3D QSAR studies on 1-amino-2-phenyl-4-(piperidin-1-yl)-butanes based on the structural modeling of human CCR5 receptor.
Xu Y, Liu H, Niu C, Luo C, Luo X, Shen J, Chen K, Jiang H, Bioorg Med Chem, 2004 Dec 1 - link

Model for the three-dimensional structure of vitronectin: predictions for the multi-domain protein from threading and docking.
Xu D, Baburaj K, Peterson CB, Xu Y, Proteins, 2001 Aug 15 - link