Optimization of high throughput virtual screening by combining shape-matching and docking methods.
Lee HS, Choi J, Kufareva I, Abagyan R, Filikov A, Yang Y, Yoon S, J Chem Inf Model, 2008 Mar - link

Surrogate docking: structure-based virtual screening at high throughput speed.
Yoon S, Smellie A, Hartsough D, Filikov A, J Comput Aided Mol Des, 2005 Jul - link

Identification of a minimal subset of receptor conformations for improved multiple conformation docking and two-step scoring.
Yoon S, Welsh WJ, J Chem Inf Comput Sci, 2004 Jan-Feb - link