Comparative performance of several flexible docking programs and scoring functions: enrichment studies for a diverse set of pharmaceutically relevant targets.
Zhou Z, Felts AK, Friesner RA, Levy RM, J Chem Inf Model, 2007 Jul-Aug - link

CoMFA 3D-QSAR analysis of HIV-1 RT nonnucleoside inhibitors, TIBO derivatives based on docking conformation and alignment.
Zhou Z, Madura JD, J Chem Inf Comput Sci, 2004 Nov-Dec - link

Discovery of diverse thyroid hormone receptor antagonists by high-throughput docking.
Schapira M, Raaka BM, Das S, Fan L, Totrov M, Zhou Z, Wilson SR, Abagyan R, Samuels HH, Proc Natl Acad Sci U S A, 2003 Jun 10 - link

Kinetic and docking studies of the interaction of quinones with the quinone reductase active site.
Zhou Z, Fisher D, Spidel J, Greenfield J, Patson B, Fazal A, Wigal C, Moe OA, Madura JD, Biochemistry, 2003 Feb 25 - link

Docking of non-nucleoside inhibitors: neotripterifordin and its derivatives to HIV-1 reverse transcriptase.
Zhou Z, Madrid M, Madura JD, Proteins, 2002 Dec 1 - link