Solvated docking: introducing water into the modelling of biomolecular complexes.
van Dijk AD, Bonvin AM, Bioinformatics, 2006 Oct 1 - link

Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility.
van Dijk M, van Dijk AD, Hsu V, Boelens R, Bonvin AM, Nucleic Acids Res, 2006 - link

Combining NMR relaxation with chemical shift perturbation data to drive protein-protein docking.
van Dijk AD, Kaptein R, Boelens R, Bonvin AM, J Biomol NMR, 2006 Apr - link

WHISCY: what information does surface conservation yield? Application to data-driven docking.
de Vries SJ, van Dijk AD, Bonvin AM, Proteins, 2006 May 15 - link

Data-driven docking: HADDOCK's adventures in CAPRI.
van Dijk AD, de Vries SJ, Dominguez C, Chen H, Zhou HX, Bonvin AM, Proteins, 2005 Aug 1 - link

Various strategies of using residual dipolar couplings in NMR-driven protein docking: application to Lys48-linked di-ubiquitin and validation against 15N-relaxation data.
van Dijk AD, Fushman D, Bonvin AM, Proteins, 2005 Aug 15 - link

Data-driven docking for the study of biomolecular complexes.
van Dijk AD, Boelens R, Bonvin AM, FEBS J, 2005 Jan - link